PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 498aa    MW: 56160.1 Da    PI: 5.2365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.7e-1689178198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k ++ps+v+   +l +pkkf+++h  +k  + t++l de+ +++  k+ ++k++    l++GW++F  a+ L  gD+++F+l++  +f  +v 
  XP_016513019.1  89 FAKFMLPSHVTGGFWLGFPKKFCDRHL-PK-HDDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLLHGDVLIFQLIQPCKF--KVY 175
                     8899**********************4.33.3459***************888888....*************************98888..666 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016513019.1 176 MIR 178
                     665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2283179IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1883180IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-2487178No hitNo description
SMARTSM010192.4E-1989180IPR003340B3 DNA binding domain
PROSITE profilePS5086311.80189180IPR003340B3 DNA binding domain
PfamPF023621.2E-1389178IPR003340B3 DNA binding domain
PfamPF052661.7E-9376478IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAISAMYSSK KSPLLSSFKK KALEIKKKLL RKRVLGPSQT YKRENGDNKK VQLCHEKKAN  60
KPSTVDANSS AMLRAEEVQA NLPSQFPSFA KFMLPSHVTG GFWLGFPKKF CDRHLPKHDD  120
TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLLHGD VLIFQLIQPC KFKVYMIRES  180
TLTELDGAIS LLNLDFHARP IESDQIEDMK ICEAKELRYL EPPVLDTHQD DKQEIDGAIS  240
LLKLDFRARP IKSDQDEGMN ICEAKEEKYL EPSVIDIDQD DENEEAILVQ NLDQGAASDQ  300
CGNDNDISSE VLGIRFSESR LEFKDVKDFS GFNILVDGLI VDSEIPAHIR NKYYDLCCTQ  360
KSFLHDHLLG GLNCKLAAGM ITETVNIADA IRASNISTSR DYLEAWDNTL KGFECLGMEV  420
GFLRARLNKL VSLSSEPQQI LESKRNELVE AKEEMRNLET KLLKVKQVIK NLDSEIDLTT  480
KDASFELKFK AVAAAPWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513019.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLK4C4N80.0K4C4N8_SOLLC; Uncharacterized protein
STRINGSolyc06g034140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-40B3 family protein